I've read your post a couple times and IF your Angle of attack is pitching up with flap deployment, there's a problem. That is not how a flap should affect the distribution of lift.
Your center of lift should be migrating aft, resulting in a nose down pitching moment, which you re-balance with trim with your horizontal to add additional downward force...the horizontal MUST produce downforce at all times, or you have a serious instability issue.
The whole point of Kellers flap, is to reduce the angle of attack, while maintaining the same net coefficient of lift, at a lower angle of attack, allowing you to fly the same approach speed, at a reduced angle of attack.
If this is opposite of what you are experiencing, I'd be very careful. Adding weight aft, could be a pretty big mistake. It strikes me that either your horizontal/elevator could be picking up wake turbulence rolling off the back of the flap and inducing a downward pitching moment at the tail, due to the long moment arm of stab, versus the short moment arm of the flap...not LIFT...but still FORCE...this is not what you want.
This could induce what you perceive as a symptom of the nose going up, when what you really have going on is a horizontal/elevator losing it's balance with a very disrupted flow, kinda hammering it in the downward direction, instead of any kind of attached flow... Meaning reduced authority.
I'd be very careful deploying those flaps, until I tufted the fuselage sides and stab/elev and could actually see what the flow is doing. Flow separation is weird and can do all kinds of odd stuff.
If you are losing the moment required to balance the negative pitching moment of the flap...then adding weight aft could be pretty catastrophic, with a loss of control, from what most would consider a tail first stall...not good for anyone.
For what it's worth on my Fat Cub...I found that the flap gap, was allowing air to roll like a wave, tumbling out of the gap, which was creating this burbling which was a complete nuisance. Closing the gap resolved the symptom completely.
not trying to be contrary...but I don't want to be a test pilot much these days...and certainly don't want to see a broken plane or person. I'd call and talk to Doug Keller.
hopefully something to consider anyway.
Steve.